PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn194051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 216aa    MW: 23671.5 Da    PI: 8.7346
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn194051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601475.2e-46131121100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l ++k+
  Achn194051  13 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTYAKS 111
                 7*********************************************************************************************99998 PP

      DUF260 100 e 100
                 e
  Achn194051 112 E 112
                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.30512113IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-4513110IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MASSSSSSST NSPCAACKFL RRKCQPECVF APYFPPDQPQ KFANVHKVFG ASNVTKLLNE  60
LHPHQREDAV NSLAYEADMR LRDPVYGCVG VISLLQHQLR QLQMDLTYAK SELSKYQNHG  120
LLAAAAAAAT IHHHNHQINL IGGMNLSSSR PDHHHHHQQQ LMRRSSLDVS NNYDASNNNS  180
NGSLLLAAGT MNAQFQYQPP RAAAGDGLRT PIHPS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266137.12e-87PREDICTED: LOB domain-containing protein 6
RefseqXP_010646844.12e-87PREDICTED: LOB domain-containing protein 6
RefseqXP_010646845.12e-87PREDICTED: LOB domain-containing protein 6
RefseqXP_010646846.12e-87PREDICTED: LOB domain-containing protein 6
SwissprotO044793e-81LBD6_ARATH; LOB domain-containing protein 6
TrEMBLD7SSJ32e-87D7SSJ3_VITVI; Putative uncharacterized protein
STRINGVIT_00s0340g00090.t017e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.43e-68LBD family protein